Here is a sample session with tfm % tfm wossname Displays a program's help documentation manual :::::::::::::: /homes/pmr/l
http://www.codebf.com/read/417857/2097055
Here is a sample session with maskseq Mask off bases 10 to 12 from a sequence 'prot.fasta' and write to the new sequence file 'prot2.seq':
http://www.codebf.com/read/417857/2097071
Here is a sample session with newseq Type in a short sequence to the file 'mycc.pep' in SWISSPROT format: % newseq Type
http://www.codebf.com/read/417857/2097075
Here is a sample session with maskfeat Mask out a feature whose type is "repeat_region" from position 2331 to 2356: % maskfe
http://www.codebf.com/read/417857/2097085
Here is a sample session with mwfilter % mwfilter Filter noisy molwts from mass spec output Molecular weights file: molwt
http://www.codebf.com/read/417857/2097089
Here is a sample session with trimseq % trimseq untrimmed.seq trim1.seq -window 1 -percent 100 Trim ambiguous bits off the e
http://www.codebf.com/read/417857/2097098
Here is a sample session with charge % charge tsw:hbb_human Protein charge plot Output file [hbb_human.charge]:
http://www.codebf.com/read/417857/2097109
Here is a sample session with patmatdb % patmatdb Search a protein sequence with a motif Input protein sequence(s): tsw:*
http://www.codebf.com/read/417857/2097115
Here is a sample session with acdtable % acdtable antigenic
http://www.codebf.com/read/417857/2097121
Here is a sample session with pepcoil % pepcoil Predicts coiled coil regions Input protein sequence(s): tsw:gcn4_yeast
http://www.codebf.com/read/417857/2097125
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