emboss的linux版本的源代码
源代码在线查看: needle.output
Output files for usage example File: hba_human.needle ######################################## # Program: needle # Rundate: Sat 15 Jul 2006 12:00:00 # Commandline: needle # [-asequence] tsw:hba_human # [-bsequence] tsw:hbb_human # Align_format: srspair # Report_file: hba_human.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: HBA_HUMAN # 2: HBB_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 148 # Identity: 63/148 (42.6%) # Similarity: 88/148 (59.5%) # Gaps: 9/148 ( 6.1%) # Score: 290.5 # # #======================================= HBA_HUMAN 1 -VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DL 48 .|:|.:|:.|.|.|||| :..|.|.|||.|:.:.:|.|:.:|..| || HBB_HUMAN 1 VHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDL 48 HBA_HUMAN 49 S-----HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRV 93 | .|:.:||.|||||..|.::.:||:|::....:.||:||..||.| HBB_HUMAN 49 STPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHV 98 HBA_HUMAN 94 DPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 ||.||:||.:.|:..||.|...||||.|.|:..|.:|.|:..|..||. HBB_HUMAN 99 DPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 146 #--------------------------------------- #---------------------------------------