Here is a sample session with infoalign % infoalign globins.msf Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the input files for this exampleGo to the output files for this example Example 2 This example doesn't display the USA of the sequence: % infoalign globins.msf -nousa Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 3 Display only the name and sequence length of a sequence: % infoalign globins.msf -only -name -seqlength Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 4 Display only the name, number of gap characters and differences to the consensus sequence: % infoalign globins.msf -only -name -gapcount -diffcount Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 5 Display the name and number of gaps within a sequence: % infoalign globins.msf -only -name -gaps Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 6 Display information formatted with HTML: % infoalign globins.msf -html Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 7 Use the first sequence as the reference sequence to compare to: % infoalign globins.msf -refseq 1 Information on a multiple sequence alignment Output file [globins.infoalign]: Go to the output files for this example Example 8 % infoalign -auto tembl:eclac* -out test.out Go to the input files for this exampleGo to the output files for this example Example 9 % infoalign -auto tembl:eclacz -out test.out Go to the input files for this exampleGo to the output files for this example
