emboss的linux版本的源代码

												Output files for usage example 				File: hsfau.restrict												########################################				# Program: restrict				# Rundate: Sat 15 Jul 2006 12:00:00				# Commandline: restrict				#    -sequence tembl:hsfau				# Report_format: table				# Report_file: hsfau.restrict				########################################								#=======================================				#				# Sequence: HSFAU     from: 1   to: 518				# HitCount: 54				#				# Minimum cuts per enzyme: 1				# Maximum cuts per enzyme: 2000000000				# Minimum length of recognition site: 4				# Blunt ends allowed				# Sticky ends allowed				# DNA is linear				# Ambiguities allowed				#				#=======================================								  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev				     11      14 TaqI        TCGA                 11     13         .         .				     28      25 AciI        CCGC                 25     27         .         .				     36      31 BseYI       CCCAGC               31     35         .         .				     38      41 AciI        CCGC                 38     40         .         .				     44      40 BceAI       ACGGC                25     27         .         .				     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .				     71      74 AciI        CCGC                 71     73         .         .				     73      76 Hin6I       GCGC                 73     75         .         .				     73      76 HhaI        GCGC                 75     73         .         .				     77      81 EcoRII      CCWGG                76     81         .         .				     77      81 BssKI       CCNGG                76     81         .         .				     94      97 TaqI        TCGA                 94     96         .         .				    103     106 HpaII       CCGG                103    105         .         .				    105     108 HaeIII      GGCC                106    106         .         .				    107     111 EcoRII      CCWGG               106    111         .         .				    107     111 BssKI       CCNGG               106    111         .         .				    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .				    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .				    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143				    146     150 BsrI        ACTGG               151    149         .         .				    161     165 BssKI       CCNGG               160    165         .         .				    162     165 HpaII       CCGG                162    164         .         .				    182     186 EcoRII      CCWGG               181    186         .         .				    182     186 BssKI       CCNGG               181    186         .         .				    190     193 Hin6I       GCGC                190    192         .         .				    190     193 HhaI        GCGC                192    190         .         .				    192     195 Hin6I       GCGC                192    194         .         .				    192     195 HhaI        GCGC                194    192         .         .				    197     201 EcoRII      CCWGG               196    201         .         .				    197     201 BssKI       CCNGG               196    201         .         .				    209     212 HaeIII      GGCC                210    210         .         .				    219     222 HaeIII      GGCC                220    220         .         .				    221     231 BsiYI       CCNNNNNNNGG         227    224         .         .				    225     221 BsrI        ACTGG               221    219         .         .				    229     226 AciI        CCGC                226    228         .         .				    236     239 HaeIII      GGCC                237    237         .         .				    248     252 EcoRII      CCWGG               247    252         .         .				    248     252 BssKI       CCNGG               247    252         .         .				    261     264 HaeIII      GGCC                262    262         .         .				    263     266 AciI        CCGC                263    265         .         .				    293     297 EcoRII      CCWGG               292    297         .         .				    293     297 BssKI       CCNGG               292    297         .         .				    296     299 HaeIII      GGCC                297    297         .         .				    335     338 HaeIII      GGCC                336    336         .         .				    380     377 AciI        CCGC                377    379         .         .				    383     380 AciI        CCGC                380    382         .         .				    395     398 HpaII       CCGG                395    397         .         .				    398     401 Hin6I       GCGC                398    400         .         .				    398     401 HhaI        GCGC                400    398         .         .				    405     410 HindII      GTYRAC              407    407         .         .				    408     413 AclI        AACGTT              409    411         .         .				    409     412 MaeII       ACGT                409    411         .         .				    417     427 BsiYI       CCNNNNNNNGG         423    420         .         .				    438     441 HaeIII      GGCC                439    439         .         .								#---------------------------------------				#---------------------------------------								#---------------------------------------				# Total_sequences: 1				# Total_hitcount: 54				#---------------------------------------																				Output files for usage example 2				File: hsfau.restrict												########################################				# Program: restrict				# Rundate: Sat 15 Jul 2006 12:00:00				# Commandline: restrict				#    -fragments				#    -sequence tembl:hsfau				# Report_format: table				# Report_file: hsfau.restrict				########################################								#=======================================				#				# Sequence: HSFAU     from: 1   to: 518				# HitCount: 54				#				# Minimum cuts per enzyme: 1				# Maximum cuts per enzyme: 2000000000				# Minimum length of recognition site: 4				# Blunt ends allowed				# Sticky ends allowed				# DNA is linear				# Ambiguities allowed				#				#=======================================								  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev				     11      14 TaqI        TCGA                 11     13         .         .				     28      25 AciI        CCGC                 25     27         .         .				     36      31 BseYI       CCCAGC               31     35         .         .				     38      41 AciI        CCGC                 38     40         .         .				     44      40 BceAI       ACGGC                25     27         .         .				     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .				     71      74 AciI        CCGC                 71     73         .         .				     73      76 Hin6I       GCGC                 73     75         .         .				     73      76 HhaI        GCGC                 75     73         .         .				     77      81 EcoRII      CCWGG                76     81         .         .				     77      81 BssKI       CCNGG                76     81         .         .				     94      97 TaqI        TCGA                 94     96         .         .				    103     106 HpaII       CCGG                103    105         .         .				    105     108 HaeIII      GGCC                106    106         .         .				    107     111 EcoRII      CCWGG               106    111         .         .				    107     111 BssKI       CCNGG               106    111         .         .				    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .				    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .				    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143				    146     150 BsrI        ACTGG               151    149         .         .				    161     165 BssKI       CCNGG               160    165         .         .				    162     165 HpaII       CCGG                162    164         .         .				    182     186 EcoRII      CCWGG               181    186         .         .				    182     186 BssKI       CCNGG               181    186         .         .												  [Part of this file has been deleted for brevity]								#     39				#     33				#     29				#     20				#     19				#     17				#     16				#     15				#     15				#     14				#     14				#     14				#     12				#     11				#     10				#     10				#     10				#     9				#     9				#     9				#     7				#     7				#     7				#     6				#     5				#     5				#     3				#     3				#     3				#     3				#     3				#     2				#     2				#     2				#     2				#     2				#     2				#     2				#     2				#     1				#     1				#     1				#     1				#     1				#				#---------------------------------------								#---------------------------------------				# Total_sequences: 1				# Total_hitcount: 54				#---------------------------------------																				Output files for usage example 3				File: hsfau.restrict												########################################				# Program: restrict				# Rundate: Sat 15 Jul 2006 12:00:00				# Commandline: restrict				#    -solofragment				#    -sequence tembl:hsfau				# Report_format: table				# Report_file: hsfau.restrict				########################################								#=======================================				#				# Sequence: HSFAU     from: 1   to: 518				# HitCount: 54				#				# Minimum cuts per enzyme: 1				# Maximum cuts per enzyme: 2000000000				# Minimum length of recognition site: 4				# Blunt ends allowed				# Sticky ends allowed				# DNA is linear				# Ambiguities allowed				#				#=======================================								  Start     End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev				     11      14 TaqI        TCGA                 11     13         .         .				     28      25 AciI        CCGC                 25     27         .         .				     36      31 BseYI       CCCAGC               31     35         .         .				     38      41 AciI        CCGC                 38     40         .         .				     44      40 BceAI       ACGGC                25     27         .         .				     71      81 BsiYI       CCNNNNNNNGG          77     74         .         .				     71      74 AciI        CCGC                 71     73         .         .				     73      76 Hin6I       GCGC                 73     75         .         .				     73      76 HhaI        GCGC                 75     73         .         .				     77      81 EcoRII      CCWGG                76     81         .         .				     77      81 BssKI       CCNGG                76     81         .         .				     94      97 TaqI        TCGA                 94     96         .         .				    103     106 HpaII       CCGG                103    105         .         .				    105     108 HaeIII      GGCC                106    106         .         .				    107     111 EcoRII      CCWGG               106    111         .         .				    107     111 BssKI       CCNGG               106    111         .         .				    107     117 BsiYI       CCNNNNNNNGG         113    110         .         .				    122     132 BsiYI       CCNNNNNNNGG         128    125         .         .				    125     135 Hin4I       GAYNNNNNVTC         116    111       148       143				    146     150 BsrI        ACTGG               151    149         .         .				    161     165 BssKI       CCNGG               160    165         .         .				    162     165 HpaII       CCGG                162    164         .         .				    182     186 EcoRII      CCWGG               181    186         .         .				    182     186 BssKI       CCNGG               181    186         .         .												  [Part of this file has been deleted for brevity]								# 	70	151	297				# 				# BssKI:				# [CCNGG]				# 	15	21	30	45	51	54				# 	76	226				# 				# EcoRII:				# [CCWGG]				# 	15	30	45	51	75	76				# 	226				# 				# HaeIII:				# [GGCC]				# 	10	17	25	35	39	79				# 	103	104	106				# 				# HhaI:				# [GCGC]				# 	2	75	117	118	206				# 				# Hin4I:				# [GAYNNNNNVTC]				# 	32	116	370				# 				# Hin6I:				# [GCGC]				# 	2	73	117	120	206				# 				# HindII:				# [GTYRAC]				# 	111	407				# 				# HpaII:				# [CCGG]				# 	59	103	123	233				# 				# MaeII:				# [ACGT]				# 	109	409				# 				# TaqI:				# [TCGA]				# 	11	83	424				#				#---------------------------------------								#---------------------------------------				# Total_sequences: 1				# Total_hitcount: 54				#---------------------------------------