emboss的linux版本的源代码

												Output files for usage example 				File: result3.comp												#				# Output from 'compseq'				#				# The Expected frequencies are calculated on the (false) assumption that every				# word has equal frequency.				#				# The input sequences are:				#	HSFAU												Word size	2				Total count	517								#				# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency				#				AA	45		0.0870406	0.0625000	1.3926499				AC	20		0.0386847	0.0625000	0.6189555				AG	45		0.0870406	0.0625000	1.3926499				AT	14		0.0270793	0.0625000	0.4332689				CA	34		0.0657640	0.0625000	1.0522244				CC	43		0.0831721	0.0625000	1.3307544				CG	25		0.0483559	0.0625000	0.7736944				CT	37		0.0715667	0.0625000	1.1450677				GA	31		0.0599613	0.0625000	0.9593810				GC	43		0.0831721	0.0625000	1.3307544				GG	46		0.0889749	0.0625000	1.4235977				GT	28		0.0541586	0.0625000	0.8665377				TA	15		0.0290135	0.0625000	0.4642166				TC	33		0.0638298	0.0625000	1.0212766				TG	32		0.0618956	0.0625000	0.9903288				TT	26		0.0502901	0.0625000	0.8046422								Other	0		0.0000000	0.0000000	10000000000.0000000																				Output files for usage example 2				File: result6.comp												#				# Output from 'compseq'				#				# Words with a frequency of zero are not reported.				# The Expected frequencies are calculated on the (false) assumption that every				# word has equal frequency.				#				# The input sequences are:				#	HSFAU												Word size	6				Total count	513								#				# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency				#				AAAAAA	6		0.0116959	0.0002441	47.9064327				AAAAAG	1		0.0019493	0.0002441	7.9844055				AAAAGC	1		0.0019493	0.0002441	7.9844055				AAAAGT	1		0.0019493	0.0002441	7.9844055				AAACAG	1		0.0019493	0.0002441	7.9844055				AAACGG	1		0.0019493	0.0002441	7.9844055				AAAGCC	1		0.0019493	0.0002441	7.9844055				AAAGTG	1		0.0019493	0.0002441	7.9844055				AAAGTT	1		0.0019493	0.0002441	7.9844055				AACAGG	1		0.0019493	0.0002441	7.9844055				AACCGG	1		0.0019493	0.0002441	7.9844055				AACGGT	1		0.0019493	0.0002441	7.9844055				AACGTT	1		0.0019493	0.0002441	7.9844055				AACTCT	1		0.0019493	0.0002441	7.9844055				AAGAAG	6		0.0116959	0.0002441	47.9064327				AAGACA	1		0.0019493	0.0002441	7.9844055				AAGATC	1		0.0019493	0.0002441	7.9844055				AAGCCA	1		0.0019493	0.0002441	7.9844055				AAGCGG	1		0.0019493	0.0002441	7.9844055				AAGGCT	1		0.0019493	0.0002441	7.9844055				AAGGGC	1		0.0019493	0.0002441	7.9844055				AAGGTG	1		0.0019493	0.0002441	7.9844055				AAGTAG	1		0.0019493	0.0002441	7.9844055				AAGTCG	1		0.0019493	0.0002441	7.9844055				AAGTCT	1		0.0019493	0.0002441	7.9844055				AAGTGA	1		0.0019493	0.0002441	7.9844055				AAGTTC	1		0.0019493	0.0002441	7.9844055				AATAAA	1		0.0019493	0.0002441	7.9844055				AATATG	1		0.0019493	0.0002441	7.9844055				AATGCC	1		0.0019493	0.0002441	7.9844055				AATTCT	1		0.0019493	0.0002441	7.9844055				ACAACC	1		0.0019493	0.0002441	7.9844055				ACACAC	1		0.0019493	0.0002441	7.9844055												  [Part of this file has been deleted for brevity]								TGAGGC	1		0.0019493	0.0002441	7.9844055				TGCAGC	1		0.0019493	0.0002441	7.9844055				TGCAGT	1		0.0019493	0.0002441	7.9844055				TGCCAA	1		0.0019493	0.0002441	7.9844055				TGCCCA	1		0.0019493	0.0002441	7.9844055				TGCCCC	1		0.0019493	0.0002441	7.9844055				TGCGGG	1		0.0019493	0.0002441	7.9844055				TGCTCC	1		0.0019493	0.0002441	7.9844055				TGCTGG	1		0.0019493	0.0002441	7.9844055				TGCTTG	1		0.0019493	0.0002441	7.9844055				TGGAAA	1		0.0019493	0.0002441	7.9844055				TGGAAG	1		0.0019493	0.0002441	7.9844055				TGGAGG	4		0.0077973	0.0002441	31.9376218				TGGCAA	1		0.0019493	0.0002441	7.9844055				TGGCAG	1		0.0019493	0.0002441	7.9844055				TGGCCA	1		0.0019493	0.0002441	7.9844055				TGGCCC	1		0.0019493	0.0002441	7.9844055				TGGCTT	1		0.0019493	0.0002441	7.9844055				TGGGAC	1		0.0019493	0.0002441	7.9844055				TGGGCC	1		0.0019493	0.0002441	7.9844055				TGGTTC	1		0.0019493	0.0002441	7.9844055				TGTAAT	1		0.0019493	0.0002441	7.9844055				TGTAGC	1		0.0019493	0.0002441	7.9844055				TGTCAA	1		0.0019493	0.0002441	7.9844055				TGTCCG	1		0.0019493	0.0002441	7.9844055				TGTGCC	1		0.0019493	0.0002441	7.9844055				TTAAGT	1		0.0019493	0.0002441	7.9844055				TTAGTT	1		0.0019493	0.0002441	7.9844055				TTCAGT	2		0.0038986	0.0002441	15.9688109				TTCATG	1		0.0019493	0.0002441	7.9844055				TTCCCT	1		0.0019493	0.0002441	7.9844055				TTCCTC	1		0.0019493	0.0002441	7.9844055				TTCGAG	1		0.0019493	0.0002441	7.9844055				TTCGCG	1		0.0019493	0.0002441	7.9844055				TTCTCG	1		0.0019493	0.0002441	7.9844055				TTCTCT	1		0.0019493	0.0002441	7.9844055				TTCTGG	1		0.0019493	0.0002441	7.9844055				TTGCCC	1		0.0019493	0.0002441	7.9844055				TTGGAG	1		0.0019493	0.0002441	7.9844055				TTGGCA	1		0.0019493	0.0002441	7.9844055				TTGTAA	1		0.0019493	0.0002441	7.9844055				TTGTCA	1		0.0019493	0.0002441	7.9844055				TTGTCC	1		0.0019493	0.0002441	7.9844055				TTGTGC	1		0.0019493	0.0002441	7.9844055				TTTCTC	2		0.0038986	0.0002441	15.9688109				TTTGGC	1		0.0019493	0.0002441	7.9844055				TTTGTA	1		0.0019493	0.0002441	7.9844055				TTTGTC	2		0.0038986	0.0002441	15.9688109				TTTTGT	1		0.0019493	0.0002441	7.9844055								Other	0		0.0000000	0.0000000	10000000000.0000000																				Output files for usage example 3				File: result3.comp												#				# Output from 'compseq'				#				# Only words in frame 2 will be counted.				# The Expected frequencies are taken from the file: ../../data/prev.comp				#				# The input sequences are:				#	HSFAU												Word size	3				Total count	172								#				# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency				#				AAA	7		0.0406977	0.0329457	1.2352955				AAC	3		0.0174419	0.0096899	1.8000042				AAG	11		0.0639535	0.0348837	1.8333344				AAT	3		0.0174419	0.0077519	2.2500110				ACA	1		0.0058140	0.0096899	0.6000014				ACC	4		0.0232558	0.0116279	2.0000012				ACG	1		0.0058140	0.0038760	1.4999880				ACT	3		0.0174419	0.0135659	1.2857135				AGA	1		0.0058140	0.0232558	0.2500002				AGC	2		0.0116279	0.0135659	0.8571423				AGG	0		0.0000000	0.0310078	0.0000000				AGT	0		0.0000000	0.0193798	0.0000000				ATA	0		0.0000000	0.0038760	0.0000000				ATC	1		0.0058140	0.0058140	0.9999920				ATG	3		0.0174419	0.0135659	1.2857135				ATT	1		0.0058140	0.0038760	1.4999880				CAA	1		0.0058140	0.0193798	0.3000007				CAC	2		0.0116279	0.0116279	1.0000006				CAG	9		0.0523256	0.0251938	2.0769229				CAT	3		0.0174419	0.0096899	1.8000042				CCA	0		0.0000000	0.0232558	0.0000000				CCC	3		0.0174419	0.0251938	0.6923076				CCG	1		0.0058140	0.0155039	0.3749994				CCT	2		0.0116279	0.0193798	0.6000014				CGA	1		0.0058140	0.0038760	1.4999880				CGC	5		0.0290698	0.0193798	1.5000035				CGG	4		0.0232558	0.0174419	1.3333303				CGT	2		0.0116279	0.0077519	1.5000074				CTA	1		0.0058140	0.0096899	0.6000014				CTC	4		0.0232558	0.0213178	1.0909106				CTG	7		0.0406977	0.0193798	2.1000049				CTT	3		0.0174419	0.0213178	0.8181829				GAA	3		0.0174419	0.0213178	0.8181829				GAC	1		0.0058140	0.0116279	0.5000003				GAG	7		0.0406977	0.0193798	2.1000049				GAT	2		0.0116279	0.0077519	1.5000074				GCA	2		0.0116279	0.0135659	0.8571423				GCC	10		0.0581395	0.0348837	1.6666677				GCG	1		0.0058140	0.0155039	0.3749994				GCT	3		0.0174419	0.0193798	0.9000021				GGA	2		0.0116279	0.0251938	0.4615384				GGC	8		0.0465116	0.0329457	1.4117663				GGG	1		0.0058140	0.0135659	0.4285712				GGT	5		0.0290698	0.0174419	1.6666629				GTA	2		0.0116279	0.0116279	1.0000006				GTC	6		0.0348837	0.0174419	1.9999955				GTG	6		0.0348837	0.0155039	2.2499965				GTT	3		0.0174419	0.0096899	1.8000042				TAA	3		0.0174419	0.0135659	1.2857135				TAC	1		0.0058140	0.0058140	0.9999920				TAG	0		0.0000000	0.0077519	0.0000000				TAT	0		0.0000000	0.0019380	0.0000000				TCA	3		0.0174419	0.0193798	0.9000021				TCC	1		0.0058140	0.0116279	0.5000003				TCG	0		0.0000000	0.0135659	0.0000000				TCT	3		0.0174419	0.0193798	0.9000021				TGA	0		0.0000000	0.0077519	0.0000000				TGC	1		0.0058140	0.0174419	0.3333326				TGG	1		0.0058140	0.0271318	0.2142856				TGT	1		0.0058140	0.0096899	0.6000014				TTA	1		0.0058140	0.0038760	1.4999880				TTC	1		0.0058140	0.0193798	0.3000007				TTG	0		0.0000000	0.0135659	0.0000000				TTT	5		0.0290698	0.0135659	2.1428558								Other	0		0.0000000	0.0000000	10000000000.0000000