emboss的linux版本的源代码

												Output files for usage example 				File: hba_human.matcher												########################################				# Program: matcher				# Rundate: Sat 15 Jul 2006 12:00:00				# Commandline: matcher				#    [-asequence] tsw:hba_human				#    [-bsequence] tsw:hbb_human				# Align_format: markx0				# Report_file: hba_human.matcher				########################################								#=======================================				#				# Aligned_sequences: 2				# 1: HBA_HUMAN				# 2: HBB_HUMAN				# Matrix: EBLOSUM62				# Gap_penalty: 14				# Extend_penalty: 4				#				# Length: 145				# Identity:      63/145 (43.4%)				# Similarity:    88/145 (60.7%)				# Gaps:           8/145 ( 5.5%)				# Score: 264				# 				#				#=======================================								              10        20        30        40         50				HBA_HU LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH				       :.: .:. : : ::::  .  : : ::: :. . .: :. .:  : ::: 				HBB_HU LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLST				             10          20        30        40        50								                    60        70        80        90     				HBA_HU -----GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDP				            :. .:: :::::  : .. .::.:..    . ::.::  :: :::				HBB_HU PDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDP				               60        70        80        90       100								         100       110       120       130       140				HBA_HU VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY				        ::.:: . :.  :: :   :::: : :.  : .: :.  :  ::				HBB_HU ENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY				              110       120       130       140     												#---------------------------------------				#---------------------------------------																				Output files for usage example 2				File: hba_human.matcher												########################################				# Program: matcher				# Rundate: Sat 15 Jul 2006 12:00:00				# Commandline: matcher				#    [-asequence] tsw:hba_human				#    [-bsequence] tsw:hbb_human				#    -alternatives 10				# Align_format: markx0				# Report_file: hba_human.matcher				########################################								#=======================================				#				# Aligned_sequences: 2				# 1: HBA_HUMAN				# 2: HBB_HUMAN				# Matrix: EBLOSUM62				# Gap_penalty: 14				# Extend_penalty: 4				#				# Length: 145				# Identity:      63/145 (43.4%)				# Similarity:    88/145 (60.7%)				# Gaps:           8/145 ( 5.5%)				# Score: 264				# 				#				#=======================================								              10        20        30        40         50				HBA_HU LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH				       :.: .:. : : ::::  .  : : ::: :. . .: :. .:  : ::: 				HBB_HU LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLST				             10          20        30        40        50								                    60        70        80        90     				HBA_HU -----GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDP				            :. .:: :::::  : .. .::.:..    . ::.::  :: :::				HBB_HU PDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDP				               60        70        80        90       100								         100       110       120       130       140				HBA_HU VNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY				        ::.:: . :.  :: :   :::: : :.  : .: :.  :  ::				HBB_HU ENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKY				              110       120       130       140     												#=======================================				#												  [Part of this file has been deleted for brevity]								#				# Aligned_sequences: 2				# 1: HBA_HUMAN				# 2: HBB_HUMAN				# Matrix: EBLOSUM62				# Gap_penalty: 14				# Extend_penalty: 4				#				# Length: 12				# Identity:       6/12 (50.0%)				# Similarity:     6/12 (50.0%)				# Gaps:           0/12 ( 0.0%)				# Score: 20				# 				#				#=======================================								             120   				HBA_HU HLPAEFTPAVHA				       ::  :   :: :				HBB_HU HLTPEEKSAVTA				              10   												#=======================================				#				# Aligned_sequences: 2				# 1: HBA_HUMAN				# 2: HBB_HUMAN				# Matrix: EBLOSUM62				# Gap_penalty: 14				# Extend_penalty: 4				#				# Length: 21				# Identity:       6/21 (28.6%)				# Similarity:     7/21 (33.3%)				# Gaps:           0/21 ( 0.0%)				# Score: 19				# 				#				#=======================================								            10        20    				HBA_HU PADKTNVKAAWGKVGAHAGEY				       :      :   :   : : .:				HBB_HU PVQAAYQKVVAGVANALAHKY				          130       140     												#---------------------------------------				#---------------------------------------