emboss的linux版本的源代码
源代码在线查看： wordfinder.output
Output files for usage example File: wordfinder.error File: eclac.wordfinder ######################################## # Program: wordfinder # Rundate: Sat 15 Jul 2006 12:00:00 # Commandline: wordfinder # [-asequence] tembl:eclac # [-bsequence] "tembl:ec*" # -wordlen 50 # -gapextend 3.0 # Align_format: simple # Report_file: eclac.wordfinder ######################################## #======================================= # # Aligned_sequences: 2 # 1: ECLAC # 2: ECLAC # Matrix: EDNAFULL # Gap_penalty: 30.0 # Extend_penalty: 3.0 # # Length: 7477 # Identity: 7477/7477 (100.0%) # Similarity: 7477/7477 (100.0%) # Gaps: 0/7477 ( 0.0%) # Score: 37385.0 # # Wordscore:7477 # Alignlength:7477 # #======================================= ECLAC 1 gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgccc 50 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLAC 1 gacaccatcgaatggcgcaaaacctttcgcggtatggcatgatagcgccc 50 ECLAC 51 ggaagagagtcaattcagggtggtgaatgtgaaaccagtaacgttatacg 100 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLAC 51 ggaagagagtcaattcagggtggtgaatgtgaaaccagtaacgttatacg 100 ECLAC 101 atgtcgcagagtatgccggtgtctcttatcagaccgtttcccgcgtggtg 150 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLAC 101 atgtcgcagagtatgccggtgtctcttatcagaccgtttcccgcgtggtg 150 ECLAC 151 aaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggc 200 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLAC 151 aaccaggccagccacgtttctgcgaaaacgcgggaaaaagtggaagcggc 200 ECLAC 201 gatggcggagctgaattacattcccaaccgcgtggcacaacaactggcgg 250 |||||||||||||||||||||||||||||||||||||||||||||||||| [Part of this file has been deleted for brevity] ECLAC 3787 tgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttattt 3836 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2501 tgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttattt 2550 ECLAC 3837 atcagccggaaaacctaccggattgatggtagtggtcaaatggcgattac 3886 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2551 atcagccggaaaacctaccggattgatggtagtggtcaaatggcgattac 2600 ECLAC 3887 cgttgatgttgaagtggcgagcgatacaccgcatccggcgcggattggcc 3936 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2601 cgttgatgttgaagtggcgagcgatacaccgcatccggcgcggattggcc 2650 ECLAC 3937 tgaactgccagctggcgcaggtagcagagcgggtaaactggctcggatta 3986 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2651 tgaactgccagctggcgcaggtagcagagcgggtaaactggctcggatta 2700 ECLAC 3987 gggccgcaagaaaactatcccgaccgccttactgccgcctgttttgaccg 4036 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2701 gggccgcaagaaaactatcccgaccgccttactgccgcctgttttgaccg 2750 ECLAC 4037 ctgggatctgccattgtcagacatgtataccccgtacgtcttcccgagcg 4086 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2751 ctgggatctgccattgtcagacatgtataccccgtacgtcttcccgagcg 2800 ECLAC 4087 aaaacggtctgcgctgcgggacgcgcgaattgaattatggcccacaccag 4136 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2801 aaaacggtctgcgctgcgggacgcgcgaattgaattatggcccacaccag 2850 ECLAC 4137 tggcgcggcgacttccagttcaacatcagccgctacagtcaacagcaact 4186 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2851 tggcgcggcgacttccagttcaacatcagccgctacagtcaacagcaact 2900 ECLAC 4187 gatggaaaccagccatcgccatctgctgcacgcggaagaaggcacatggc 4236 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2901 gatggaaaccagccatcgccatctgctgcacgcggaagaaggcacatggc 2950 ECLAC 4237 tgaatatcgacggtttccatatggggattggtggcgacgactcctggagc 4286 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 2951 tgaatatcgacggtttccatatggggattggtggcgacgactcctggagc 3000 ECLAC 4287 ccgtcagtatcggcggaattccagctgagcgccggtcgctaccattacca 4336 |||||||||||||||||||||||||||||||||||||||||||||||||| ECLACZ 3001 ccgtcagtatcggcggaattccagctgagcgccggtcgctaccattacca 3050 ECLAC 4337 gttggtctggtgtcaaaaataataataa 4364 |||||||||||||||||||||||||||| ECLACZ 3051 gttggtctggtgtcaaaaataataataa 3078 #--------------------------------------- #---------------------------------------
